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| Homoeocladia delognei (Grunow in Van Heurck) Kuntze 1898 |
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| Homoeocladia dianae (Ehrenberg) Kuntze 1898 |
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| Homoeocladia diluviana (Cleve in Cleve & Jentzsch) Kuntze 1898 |
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| Homoeocladia dippelii (Grunow) Kuntze 1898 |
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| Homoeocladia dissipata (Kützing) Kuntze 1898 |
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| Homoeocladia distans (Gregory) Kuntze 1898 |
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| Homoeocladia doljensis (Pantocsek) Kuntze 1898 |
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| Homoeocladia dubia (W. Smith) Kuntze 1898 |
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| Homoeocladia dubravicensis (Grunow) Kuntze 1898 |
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| Homoeocladia elongata (Hantzsch) Kuntze 1898 |
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| Homoeocladia elongata (Hassall) Kuntze 1898 |
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| Homoeocladia entomon (entemon) (Ehrenberg) Kuntze 1898 |
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| Homoeocladia eximia (Grunow in Cleve & Grunow) Kuntze 1898 |
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| Homoeocladia fasciculata (Grunow; Grunow in Van Heurck) Kuntze 1898 |
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| Homoeocladia febigeri (febigerii) (Grunow in Cleve & Grunow) Kuntze 1898 |
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| Homoeocladia flexella (Suringar; Suringar) Kuntze 1898 |
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| Homoeocladia fluminensis (Grunow) Kuntze 1898 |
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| Homoeocladia fragilarioides (Grunow in Cleve & Grunow) Kuntze 1898 |
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| Homoeocladia franconica (Reinsch; Rabenhorst) Kuntze 1898 |
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| Homoeocladia frauenfeldii (Grunow) Kuntze 1898 |
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